W4M/LC-MS - Upload files

Goal

How to import the input dataset within the Galaxy instance ?
Explain what is a Galaxy Dataset Collection ?

At the end of the course, you will be able to import your dataset.

Prerequisites

List of softwares :

  • 7zip
  • Cyberduck (or WinSCP or Filezilla)
Introduction

Import your data is the first step in an analysis but is not so trivial.

Summary
  • Import the "Raw" data in "DataSet Collection 
  • Import the SampleMetadata Sheet
  • How to use those data in the First steps
Contents
Conclusion

Uploading dataset within Galaxy isn't so complicated. Upstream, it's necessary to well describe the experimental plan in the sampleMetadata.

References
  • Enis Afgan, Dannon Baker, Bérénice Batut, Marius van den Beek, Dave Bouvier, Martin Čech, John Chilton, Dave Clements, Nate Coraor, Björn Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Vahid Jalili, Helena Rasche, Nicola Soranzo, Jeremy Goecks, James Taylor, Anton Nekrutenko, and Daniel Blankenberg. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update, Nucleic Acids Research, Volume 46, Issue W1, 2 July 2018, Pages W537–W544, doi:10.1093/nar/gky379
  • https://galaxyproject.org/tutorials/upload/