W4M/NMR - Upload files

Galaxy
Dataset
File upload
Importation
Goal

How to import the input dataset within the Galaxy instance?

 

Prerequisites

List of software: - 7zip - Cyberduck (or WinSCP or Filezilla)

Introduction

Import your data is the first step in an analysis but is not so trivial.

Summary
  • Data preparation
  • Choose a FTP Client
  • Upload
Contents
Conclusion

Uploading dataset within Galaxy isn't so complicated. Upstream, it's necessary to well describe the experimental plan in the sampleMetadata.

References
  • Enis Afgan, Dannon Baker, Bérénice Batut, Marius van den Beek, Dave Bouvier, Martin Čech, John Chilton, Dave Clements, Nate Coraor, Björn Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Vahid Jalili, Helena Rasche, Nicola Soranzo, Jeremy Goecks, James Taylor, Anton Nekrutenko, and Daniel Blankenberg. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update, Nucleic Acids Research, Volume 46, Issue W1, 2 July 2018, Pages W537–W544, doi:10.1093/nar/gky379
  • https://galaxyproject.org/tutorials/upload/